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Tfpi2 tissue factor pathway inhibitor 2 [ Mus musculus (house mouse) ]

Gene ID: 21789, updated on 2-Nov-2024

Summary

Official Symbol
Tfpi2provided by MGI
Official Full Name
tissue factor pathway inhibitor 2provided by MGI
Primary source
MGI:MGI:108543
See related
Ensembl:ENSMUSG00000029664 AllianceGenome:MGI:108543
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
PP5/TFPI-2
Summary
Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in blood coagulation; cellular response to fluid shear stress; and negative regulation of peptidase activity. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including genitourinary system; liver; lung; small intestine; and spleen. Human ortholog(s) of this gene implicated in acute myeloid leukemia and retinal degeneration. Orthologous to human TFPI2 (tissue factor pathway inhibitor 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in liver E18 (RPKM 13.4), placenta adult (RPKM 12.1) and 8 other tissues See more
Orthologs
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Genomic context

See Tfpi2 in Genome Data Viewer
Location:
6 A1; 6 1.81 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (3962589..3988977, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (3962589..3988978, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene calcitonin receptor Neighboring gene predicted gene, 33576 Neighboring gene STARR-seq mESC enhancer starr_15003 Neighboring gene STARR-seq mESC enhancer starr_15005 Neighboring gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudogene Neighboring gene STARR-seq mESC enhancer starr_15006 Neighboring gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 Neighboring gene guanine nucleotide binding protein (G protein), gamma 11

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 
  • Targeted (2)  1 citation

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in blood coagulation IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to fluid shear stress IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of peptidase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
tissue factor pathway inhibitor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001381907.1NP_001368836.1  tissue factor pathway inhibitor 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC022235
    Conserved Domains (2) summary
    cd00109
    Location:3083
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    pfam00014
    Location:151203
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
  2. NM_001381908.1NP_001368837.1  tissue factor pathway inhibitor 2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC022235
    Conserved Domains (2) summary
    cd00109
    Location:70123
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    pfam00014
    Location:191243
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
  3. NM_009364.4NP_033390.1  tissue factor pathway inhibitor 2 isoform 1 precursor

    See identical proteins and their annotated locations for NP_033390.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the protein.
    Source sequence(s)
    AK132268, BU755117
    Consensus CDS
    CCDS19892.1
    UniProtKB/Swiss-Prot
    O35536
    UniProtKB/TrEMBL
    Q3V1S9
    Related
    ENSMUSP00000031674.8, ENSMUST00000031674.11
    Conserved Domains (2) summary
    cd00109
    Location:3487
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    pfam00014
    Location:155206
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain

RNA

  1. NR_138566.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents use of an alternate promoter and differs in the 5' terminal exon compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq criteria.
    Source sequence(s)
    AC022235

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    3962589..3988977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011241056.3XP_011239358.1  tissue factor pathway inhibitor 2 isoform X2

    Conserved Domains (1) summary
    pfam00014
    Location:90141
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
  2. XM_011241055.4XP_011239357.1  tissue factor pathway inhibitor 2 isoform X1

    See identical proteins and their annotated locations for XP_011239357.1

    UniProtKB/Swiss-Prot
    O35536
    UniProtKB/TrEMBL
    Q3V1S9
    Conserved Domains (2) summary
    cd00109
    Location:3487
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    pfam00014
    Location:155206
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain