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Phf11d PHD finger protein 11D [ Mus musculus (house mouse) ]

Gene ID: 219132, updated on 2-Nov-2024

Summary

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Official Symbol
Phf11dprovided by MGI
Official Full Name
PHD finger protein 11Dprovided by MGI
Primary source
MGI:MGI:1277133
See related
Ensembl:ENSMUSG00000068245 AllianceGenome:MGI:1277133
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Phf11; Phf11l; D14Ertd668e
Summary
Predicted to enable metal ion binding activity. Predicted to be located in nuclear membrane and nucleoplasm. Predicted to be active in nucleus. Is expressed in alimentary system; axial musculature; orbito-sphenoid; submandibular gland primordium; and vibrissa. Orthologous to human PHF11 (PHD finger protein 11). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in bladder adult (RPKM 3.9), mammary gland adult (RPKM 3.6) and 22 other tissues See more
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Genomic context

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See Phf11d in Genome Data Viewer
Location:
14 C3; 14 31.48 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (59584646..59608004, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (59347407..59365490, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene PHD finger protein 11A Neighboring gene STARR-positive B cell enhancer mm9_chr14:59916339-59916640 Neighboring gene PHD finger protein 11B Neighboring gene STARR-positive B cell enhancer ABC_E11570 Neighboring gene STARR-seq mESC enhancer starr_36838 Neighboring gene STARR-seq mESC enhancer starr_36839 Neighboring gene predicted gene, 45935 Neighboring gene PHD finger protein 11C Neighboring gene SET domain, bifurcated 2 Neighboring gene STARR-positive B cell enhancer ABC_E4112

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Functional analysis of a novel ENU-induced PHD finger 11 (Phf11) mouse mutant. Zhang Y, et al. Mamm Genome, 2014 Dec. PMID 25091723, Free PMC Article
  2. A novel view of the transcriptome revealed from gene trapping in mouse embryonic stem cells. Roma G, et al. Genome Res, 2007 Jul. PMID 17540781, Free PMC Article
  3. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  4. Identification of transcripts with enriched expression in the developing and adult pancreas. Hoffman BG, et al. Genome Biol, 2008. PMID 18554416, Free PMC Article
  5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Only Phf11d is present in multiple mouse tissue cDNAs.
    Title: Functional analysis of a novel ENU-induced PHD finger 11 (Phf11) mouse mutant.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Chemically induced (ENU) (1)  1 citation
  • Endonuclease-mediated (1) 

General gene information

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Markers

Readthrough Gm45935

Readthrough gene: Gm45935, Included gene: Setdb2, Included gene: Phf11c

Homology

Clone Names

  • MGC29273

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nuclear membrane ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PHD finger protein 11
Names
PHD finger protein 11 family member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419878.1 → NP_001406807.1  PHD finger protein 11 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114007
    UniProtKB/Swiss-Prot
    A6H5X4, Q3U0T6, Q8K2R8
    Related
    ENSMUSP00000125181.2, ENSMUST00000161031.2

  2. NM_001419879.1 → NP_001406808.1  PHD finger protein 11 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC114007

  3. NM_001419880.1 → NP_001406809.1  PHD finger protein 11 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC114007

  4. NM_001419881.1 → NP_001406810.1  PHD finger protein 11 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC114007

  5. NM_001419882.1 → NP_001406811.1  PHD finger protein 11 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC114007

  6. NM_001419883.1 → NP_001406812.1  PHD finger protein 11 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC114007

  7. NM_001419884.1 → NP_001406813.1  PHD finger protein 11 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC114007
    Related
    ENSMUSP00000124578.2, ENSMUST00000160425.8

  8. NM_001419885.1 → NP_001406814.1  PHD finger protein 11 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AC114007

  9. NM_001419886.1 → NP_001406815.1  PHD finger protein 11 isoform 10

    Status: VALIDATED

    Source sequence(s)
    AC114007

  10. NM_001419887.1 → NP_001406816.1  PHD finger protein 11 isoform 11

    Status: VALIDATED

    Source sequence(s)
    AC114007

  11. NM_199015.5 → NP_950180.3  PHD finger protein 11 isoform 2

    See identical proteins and their annotated locations for NP_950180.3

    Status: VALIDATED

    Source sequence(s)
    AC114007
    Consensus CDS
    CCDS27170.3
    UniProtKB/Swiss-Prot
    A6H5X4
    UniProtKB/TrEMBL
    B4XVQ0
    Related
    ENSMUSP00000092779.5, ENSMUST00000095157.11
    Conserved Domains (1) summary
    cl22851
    Location:28 → 142
    PHD_SF; PHD finger superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    59584646..59608004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001164323.1: Suppressed sequence

    Description
    NM_001164323.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6H5X4.1 GenPept UniProtKB/Swiss-Prot:A6H5X4

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