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Tspy-ps testis specific protein-Y encoded, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 22109, updated on 22-Oct-2024

Summary

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Official Symbol
Tspy-psprovided by MGI
Official Full Name
testis specific protein-Y encoded, pseudogeneprovided by MGI
Primary source
MGI:MGI:1201688
See related
Ensembl:ENSMUSG00000121462 AllianceGenome:MGI:1201688
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 2.4) See more
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Genomic context

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See Tspy-ps in Genome Data Viewer
Location:
Y; Ypter
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) Y NC_000087.8 (1055764..1058868, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) Y NC_000087.7 (1055764..1058868, complement)

Chromosome Y - NC_000087.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_48296 Neighboring gene nuclear encoded rRNA 5S 1 Neighboring gene eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked Neighboring gene STARR-seq mESC enhancer starr_48297 Neighboring gene STARR-seq mESC enhancer starr_48298 Neighboring gene ubiquitously transcribed tetratricopeptide repeat containing, Y-linked Neighboring gene DEAD box helicase 3, Y-linked Neighboring gene predicted gene 4017

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Transgenic engineering of male-specific muscular hypertrophy. Pirottin D, et al. Proc Natl Acad Sci U S A, 2005 May 3. PMID 15851664, Free PMC Article
  2. Molecular evolution of the murine tspy genes. Schubert S, et al. Cytogenet Cell Genet, 2000. PMID 11173864
  3. A murine TSPY. Vogel T, et al. Chromosome Res, 1998 Jan. PMID 9510508
  4. Silencing of the Y-chromosomal gene tspy during murine evolution. Schubert S, et al. Mamm Genome, 2000 Apr. PMID 10754104
  5. Rodent Y chromosome TSPY gene is functional in rat and non-functional in mouse. Mazeyrat S, et al. Hum Mol Genet, 1998 Mar. PMID 9467017

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027507.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC148319
    Related
    ENSMUST00000172304.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000087.8 Reference GRCm39 C57BL/6J

    Range
    1055764..1058868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001475.1: Suppressed sequence

    Description
    NG_001475.1: This RefSeq was permanently suppressed because evidence exists that it is a transcribed pseudogene. The gene is represented by NR_027507.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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