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AI661453 expressed sequence AI661453 [ Mus musculus (house mouse) ]

Gene ID: 224833, updated on 28-Oct-2024

Summary

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Official Symbol
AI661453provided by MGI
Official Full Name
expressed sequence AI661453provided by MGI
Primary source
MGI:MGI:2146908
See related
Ensembl:ENSMUSG00000034382 AllianceGenome:MGI:2146908
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in embryo endoderm; gut; and lung. Orthologous to human C6orf132 (chromosome 6 open reading frame 132). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in stomach adult (RPKM 13.1), small intestine adult (RPKM 8.6) and 13 other tissues See more
Orthologs
human all
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Genomic context

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See AI661453 in Genome Data Viewer
Location:
17 C; 17 23.18 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (47747564..47781563)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (47436639..47470638)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42700 Neighboring gene guanylate cyclase activator 1B Neighboring gene guanylate cyclase activator 1a (retina) Neighboring gene Morf4 family associated protein 1 pseudogene Neighboring gene ciliary microtubule inner protein 3 Neighboring gene STARR-seq mESC enhancer starr_42703 Neighboring gene STARR-positive B cell enhancer ABC_E9168 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47641447-47641630 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47641910-47642097 Neighboring gene TATA-box binding protein associated factor 8 Neighboring gene STARR-positive B cell enhancer ABC_E5616 Neighboring gene STARR-seq mESC enhancer starr_42710 Neighboring gene STARR-positive B cell enhancer ABC_E10958 Neighboring gene VISTA enhancer mm1691 Neighboring gene cyclin D3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47668330-47668738 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47679075-47679320 Neighboring gene predicted gene, 41590

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A Comprehensive Analysis of Fibroblast Growth Factor Receptor 2b Signaling on Epithelial Tip Progenitor Cells During Early Mouse Lung Branching Morphogenesis. Jones MR, et al. Front Genet, 2018. PMID 30728831, Free PMC Article
  2. Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord. Tamplin OJ, et al. Dev Biol, 2011 Dec 15. PMID 22008794
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C6orf132 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145489.3 → NP_663464.2  uncharacterized protein C6orf132 homolog

    See identical proteins and their annotated locations for NP_663464.2

    Status: VALIDATED

    Source sequence(s)
    AC139214
    Consensus CDS
    CCDS50131.1
    UniProtKB/Swiss-Prot
    Q8K108, Q91Z58
    Related
    ENSMUSP00000120133.3, ENSMUST00000150819.3
    Conserved Domains (2) summary
    PHA03247
    Location:233 → 765
    PHA03247; large tegument protein UL36; Provisional
    PHA03378
    Location:612 → 820
    PHA03378; EBNA-3B; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    47747564..47781563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q91Z58.2 GenPept UniProtKB/Swiss-Prot:Q91Z58

Gene LinkOut

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