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Zfp959 zinc finger protein 959 [ Mus musculus (house mouse) ]

Gene ID: 224893, updated on 2-Nov-2024

Summary

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Official Symbol
Zfp959provided by MGI
Official Full Name
zinc finger protein 959provided by MGI
Primary source
MGI:MGI:2385058
See related
Ensembl:ENSMUSG00000003198 AllianceGenome:MGI:2385058
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in bladder adult (RPKM 1.7), CNS E14 (RPKM 1.6) and 28 other tissues See more
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Genomic context

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See Zfp959 in Genome Data Viewer
Location:
17 D; 17 29.05 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (56199093..56205935)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (55891084..55898935)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor E4 Neighboring gene STARR-seq mESC enhancer starr_42871 Neighboring gene vomeronasal 2, receptor 121 pseudogene Neighboring gene STARR-seq mESC enhancer starr_42872 Neighboring gene zinc finger protein 119a Neighboring gene STARR-positive B cell enhancer ABC_E2495 Neighboring gene predicted gene, 41603 Neighboring gene ribosomal protein L21, pseudogene 6 Neighboring gene STARR-seq mESC enhancer starr_42873 Neighboring gene STARR-positive B cell enhancer ABC_E4220 Neighboring gene STARR-positive B cell enhancer ABC_E7546 Neighboring gene zinc finger protein 119b Neighboring gene predicted gene, 16712 Neighboring gene Epstein-Barr virus induced gene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  2. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  3. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
  4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC18740

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC224893

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001360136.1 → NP_001347065.1  uncharacterized protein LOC224893 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at a downstream AUG and result in an isoform (2) with a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AC154235, CT573084
    Conserved Domains (4) summary
    COG5048
    Location:366 → 499
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:398 → 418
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:1 → 41
    KRAB; KRAB box
    pfam13465
    Location:299 → 323
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001410544.1 → NP_001397473.1  uncharacterized protein LOC224893 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC154235, CT573084

  3. NM_001410545.1 → NP_001397474.1  uncharacterized protein LOC224893 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC154235, CT573084

  4. NM_001410546.1 → NP_001397475.1  uncharacterized protein LOC224893 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC154235, CT573084

  5. NM_001410547.1 → NP_001397476.1  uncharacterized protein LOC224893 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC154235, CT573084

  6. NM_001410548.1 → NP_001397477.1  uncharacterized protein LOC224893 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC154235, CT573084

  7. NM_001410549.1 → NP_001397478.1  uncharacterized protein LOC224893 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC154235, CT573084

  8. NM_001410550.1 → NP_001397479.1  uncharacterized protein LOC224893 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC154235, CT573084

  9. NM_145490.5 → NP_663465.1  uncharacterized protein LOC224893 isoform 1

    See identical proteins and their annotated locations for NP_663465.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC154235, CT573084
    Consensus CDS
    CCDS37657.1
    UniProtKB/TrEMBL
    Q91VM8
    Related
    ENSMUSP00000053979.9, ENSMUST00000054780.10
    Conserved Domains (5) summary
    smart00349
    Location:4 → 45
    KRAB; krueppel associated box
    COG5048
    Location:369 → 502
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:401 → 421
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 41
    KRAB; KRAB box
    pfam13465
    Location:441 → 466
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    56199093..56205935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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