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Odr4 odr4 GPCR localization factor homolog [ Mus musculus (house mouse) ]

Gene ID: 226499, updated on 28-Oct-2024

Summary

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Official Symbol
Odr4provided by MGI
Official Full Name
odr4 GPCR localization factor homologprovided by MGI
Primary source
MGI:MGI:2385108
See related
Ensembl:ENSMUSG00000006010 AllianceGenome:MGI:2385108
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
odr-4; 1810053E15Rik
Summary
Predicted to be involved in protein localization. Predicted to be located in membrane. Is expressed in several structures, including choroid invagination; craniocervical region bone; embryo mesenchyme; meninges; and sensory organ. Orthologous to human ODR4 (odr-4 GPCR localization factor homolog). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Ubiquitous expression in bladder adult (RPKM 12.0), frontal lobe adult (RPKM 8.4) and 25 other tissues See more
Orthologs
human all
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Genomic context

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See Odr4 in Genome Data Viewer
Location:
1 G1; 1 63.84 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (150237056..150268831, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (150361305..150393080, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene protein BEX4-like Neighboring gene STARR-seq mESC enhancer starr_02598 Neighboring gene RIKEN cDNA 2310030A07 gene Neighboring gene STARR-seq mESC enhancer starr_02599 Neighboring gene phosducin Neighboring gene STARR-positive B cell enhancer mm9_chr1:152220093-152220393 Neighboring gene STARR-positive B cell enhancer ABC_E4355 Neighboring gene STARR-positive B cell enhancer ABC_E9061 Neighboring gene STARR-positive B cell enhancer ABC_E2013 Neighboring gene STARR-seq mESC enhancer starr_02600 Neighboring gene translocated promoter region, nuclear basket protein Neighboring gene STARR-seq mESC enhancer starr_02601 Neighboring gene proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) Neighboring gene predicted gene, 41967

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of transcripts with enriched expression in the developing and adult pancreas. Hoffman BG, et al. Genome Biol, 2008. PMID 18554416, Free PMC Article
  2. Irisin Mediates Effects on Bone and Fat via αV Integrin Receptors. Kim H, et al. Cell, 2018 Dec 13. PMID 30550785, Free PMC Article
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC7150

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein localization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein odr-4 homolog
Names
mODR-4
olfactory specific odr-4
NP_001070705.1
NP_001344508.1
NP_663486.2
XP_036019881.1
XP_036019882.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077237.1 → NP_001070705.1  protein odr-4 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1. The resulting protein (isoform 2) is shorter than isoform 1.
    Source sequence(s)
    AC121113, AK152022, BE134939, BY247764, CB235715
    Consensus CDS
    CCDS35733.1
    UniProtKB/Swiss-Prot
    Q4PJX1
    Related
    ENSMUSP00000095153.4, ENSMUST00000097547.10
    Conserved Domains (1) summary
    pfam14778
    Location:28 → 347
    ODR4-like; Olfactory receptor 4-like

  2. NM_001357579.1 → NP_001344508.1  protein odr-4 homolog isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC121113, AC161432
    Conserved Domains (1) summary
    pfam14778
    Location:1 → 298
    ODR4-like; Olfactory receptor 4-like

  3. NM_145511.2 → NP_663486.2  protein odr-4 homolog isoform 1

    See identical proteins and their annotated locations for NP_663486.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC121113, AK152022, BE134939, BY247764, CB235715, CX243768
    Consensus CDS
    CCDS15355.2
    UniProtKB/Swiss-Prot
    Q3U8Y3, Q4PJX1, Q99J66
    Related
    ENSMUSP00000107544.3, ENSMUST00000111913.9
    Conserved Domains (1) summary
    pfam14778
    Location:28 → 379
    ODR4-like; Olfactory receptor 4-like

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    150237056..150268831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036163989.1 → XP_036019882.1  protein odr-4 homolog isoform X2

    Conserved Domains (1) summary
    pfam14778
    Location:1 → 250
    ODR4-like; Olfactory receptor 4-like

  2. XM_036163988.1 → XP_036019881.1  protein odr-4 homolog isoform X1

    Conserved Domains (1) summary
    pfam14778
    Location:28 → 331
    ODR4-like; Olfactory receptor 4-like
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4PJX1.2 GenPept UniProtKB/Swiss-Prot:Q4PJX1

Gene LinkOut

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