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Parm1 prostate androgen-regulated mucin-like protein 1 [ Mus musculus (house mouse) ]

Gene ID: 231440, updated on 2-Nov-2024

Summary

Official Symbol
Parm1provided by MGI
Official Full Name
prostate androgen-regulated mucin-like protein 1provided by MGI
Primary source
MGI:MGI:2443349
See related
Ensembl:ENSMUSG00000034981 AllianceGenome:MGI:2443349
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2210012L08Rik; 9130213B05Rik
Summary
Predicted to be located in cytosol and nucleoplasm. Predicted to be active in Golgi apparatus; endosome; and plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; genitourinary system; and nose. Orthologous to human PARM1 (prostate androgen-regulated mucin-like protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in adrenal adult (RPKM 96.9), colon adult (RPKM 66.3) and 13 other tissues See more
Orthologs
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Genomic context

See Parm1 in Genome Data Viewer
Location:
5 E2; 5 44.78 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (91665559..91771870)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (91517700..91624011)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene betacellulin, epidermal growth factor family member Neighboring gene predicted gene, 42110 Neighboring gene predicted gene, 57739 Neighboring gene STARR-seq mESC enhancer starr_13614 Neighboring gene STARR-seq mESC enhancer starr_13615 Neighboring gene STARR-seq mESC enhancer starr_13616 Neighboring gene STARR-seq mESC enhancer starr_13617 Neighboring gene STARR-seq mESC enhancer starr_13618 Neighboring gene predicted gene, 36222 Neighboring gene tRNA methyltransferase 11-2, pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (1)  1 citation

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in Golgi apparatus ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in early endosome IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in early endosome ISO
Inferred from Sequence Orthology
more info
 
located_in early endosome ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
is_active_in late endosome IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in late endosome ISO
Inferred from Sequence Orthology
more info
 
located_in late endosome ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
prostate androgen-regulated mucin-like protein 1 homolog
Names
PARM-1
prostatic androgen-repressed message-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145562.2NP_663537.1  prostate androgen-regulated mucin-like protein 1 homolog precursor

    See identical proteins and their annotated locations for NP_663537.1

    Status: PROVISIONAL

    Source sequence(s)
    AC115723, AC122216
    Consensus CDS
    CCDS39146.1
    UniProtKB/Swiss-Prot
    A5JSU4, Q3TTV0, Q3UFU4, Q923D3
    Related
    ENSMUSP00000042844.10, ENSMUST00000040576.10
    Conserved Domains (2) summary
    pfam15310
    Location:124219
    VAD1-2; Vitamin A-deficiency (VAD) rat model signalling
    pfam17061
    Location:15296
    PARM; PARM

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    91665559..91771870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)