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OFD1P17 OFD1 pseudogene 17 [ Homo sapiens (human) ]

Gene ID: 23738, updated on 10-Oct-2023

Summary

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Official Symbol
OFD1P17provided by HGNC
Official Full Name
OFD1 pseudogene 17provided by HGNC
Primary source
HGNC:HGNC:1332
See related
Ensembl:ENSG00000228212 AllianceGenome:HGNC:1332
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
71-7A3; 71-7A5; C5orf1; OFD1P1
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Genomic context

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See OFD1P17 in Genome Data Viewer
Location:
5p13.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (37208999..37212497)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (37458825..37462323)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (37209101..37212599)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:37086387-37087171 Neighboring gene ciliogenesis and planar polarity effector complex subunit 1 Neighboring gene NANOG hESC enhancer GRCh37_chr5:37093777-37094356 Neighboring gene ribosomal protein S4X pseudogene 6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15977 Neighboring gene RBIS pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:37152807-37152989 Neighboring gene MPRA-validated peak5227 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22485 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15978 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15979 Neighboring gene CPLANE1 antisense RNA 1 Neighboring gene RNA, 7SL, cytoplasmic 37, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of Cxorf5 (71-7A), a novel human cDNA mapping to Xp22 and encoding a protein containing coiled-coil alpha-helical domains. de Conciliis L, et al. Genomics, 1998 Jul 15. PMID 9722947

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • OFD1 pseudogene 1
  • oral-facial-digital syndrome 1 pseudogene
  • oral-facial-digital syndrome 1, pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_003023.6 

    Range
    101..3599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    37208999..37212497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    37458825..37462323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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