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E230025N22Rik Riken cDNA E230025N22 gene [ Mus musculus (house mouse) ]

Gene ID: 240216, updated on 17-Aug-2024

Summary

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Official Symbol
E230025N22Rikprovided by MGI
Official Full Name
Riken cDNA E230025N22 geneprovided by MGI
Primary source
MGI:MGI:3687212
See related
Ensembl:ENSMUSG00000044719 AllianceGenome:MGI:3687212
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG240216
Expression
Biased expression in colon adult (RPKM 1.4), large intestine adult (RPKM 0.2) and 5 other tissues See more
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Genomic context

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See E230025N22Rik in Genome Data Viewer
Location:
18 B2; 18 19.46 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (36817976..36829162, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (36684923..36696091, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5653 Neighboring gene steroid receptor RNA activator 1 Neighboring gene amyloid beta precursor protein binding family B member 3 Neighboring gene STARR-positive B cell enhancer ABC_E8708 Neighboring gene solute carrier family 35, member A4 Neighboring gene STARR-seq mESC enhancer starr_44297 Neighboring gene predicted gene, 41699 Neighboring gene CD14 antigen

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A global genomic transcriptional code associated with CNS-expressed genes. Bailey PJ, et al. Exp Cell Res, 2006 Oct 1. PMID 16919269
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC240216

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172831.2 → NP_766419.2  uncharacterized protein LOC240216

    See identical proteins and their annotated locations for NP_766419.2

    Status: VALIDATED

    Source sequence(s)
    AC027740, AK087618, BB551085, BB666007
    Consensus CDS
    CCDS37771.1
    UniProtKB/TrEMBL
    G5E8S3, Q8BU60
    Related
    ENSMUSP00000111346.2, ENSMUST00000115682.2
    Conserved Domains (1) summary
    pfam00225
    Location:4 → 106
    Kinesin; Kinesin motor domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    36817976..36829162 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317899.2 → XP_017173388.1  uncharacterized protein LOC240216 isoform X3

    UniProtKB/TrEMBL
    Q8BU60

  2. XM_011246923.3 → XP_011245225.1  uncharacterized protein LOC240216 isoform X2

    See identical proteins and their annotated locations for XP_011245225.1

    UniProtKB/TrEMBL
    G5E8S3, Q8BU60
    Conserved Domains (1) summary
    pfam00225
    Location:4 → 106
    Kinesin; Kinesin motor domain

  3. XM_017317898.2 → XP_017173387.1  uncharacterized protein LOC240216 isoform X1

    UniProtKB/TrEMBL
    Q8BU60
    Conserved Domains (1) summary
    pfam00225
    Location:4 → 106
    Kinesin; Kinesin motor domain

  4. XM_017317900.3 → XP_017173389.1  uncharacterized protein LOC240216 isoform X4

    Conserved Domains (1) summary
    pfam00225
    Location:4 → 106
    Kinesin; Kinesin motor domain

  5. XM_030250453.2 → XP_030106313.1  uncharacterized protein LOC240216 isoform X5

    Conserved Domains (1) summary
    pfam00225
    Location:4 → 106
    Kinesin; Kinesin motor domain
Nucleotide Protein Strain
Heading Accession and Version

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