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nhr-117 Nuclear Hormone Receptor family [ Caenorhabditis elegans ]

Gene ID: 24104436, updated on 2-Nov-2024

Summary

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Official Symbol
nhr-117
Official Full Name
Nuclear Hormone Receptor family
Primary source
WormBase:WBGene00003707
Locus tag
CELE_F16B4.12
See related
AllianceGenome:WB:WBGene00003707
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in intestine and terminal bulb. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nhr-117 in Genome Data Viewer
Location:
chromosome: V
Exon count:
6
Sequence:
Chromosome: V; NC_003283.11 (1619415..1621520, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Serpentine Receptor, class BC (Class B-like) Neighboring gene NR LBD domain-containing protein Neighboring gene NR LBD domain-containing protein;Nuclear receptor domain-containing protein Neighboring gene NR LBD domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine. McGhee JD, et al. Dev Biol, 2007 Feb 15. PMID 17113066
  2. Transcriptional regulation. Okkema PG, et al. WormBook, 2005 Dec 23. PMID 18050428, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Nuclear Hormone Receptor family
NP_001294718.1
  • Confirmed by transcript evidence
NP_001294719.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    1619415..1621520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001307789.5 → NP_001294718.1  Nuclear Hormone Receptor family [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294718.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MNW2
    Conserved Domains (2) summary
    smart00399
    Location:33 → 103
    ZnF_C4; c4 zinc finger in nuclear hormone receptors
    pfam00104
    Location:206 → 411
    Hormone_recep; Ligand-binding domain of nuclear hormone receptor

  2. NM_001307790.4 → NP_001294719.1  Nuclear Hormone Receptor family [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294719.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O44638
    Conserved Domains (2) summary
    smart00399
    Location:33 → 103
    ZnF_C4; c4 zinc finger in nuclear hormone receptors
    pfam00104
    Location:248 → 453
    Hormone_recep; Ligand-binding domain of nuclear hormone receptor

RNA

  1. NR_132511.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

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