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Fam78a family with sequence similarity 78, member A [ Mus musculus (house mouse) ]

Gene ID: 241303, updated on 2-Nov-2024

Summary

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Official Symbol
Fam78aprovided by MGI
Official Full Name
family with sequence similarity 78, member Aprovided by MGI
Primary source
MGI:MGI:2443569
See related
Ensembl:ENSMUSG00000050592 Ensembl:ENSMUSG00000090157 AllianceGenome:MGI:2443569
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A130092J06Rik
Summary
Is expressed in tongue muscle. Orthologous to human FAM78A (family with sequence similarity 78 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in thymus adult (RPKM 46.7), testis adult (RPKM 44.1) and 10 other tissues See more
Orthologs
human all
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Genomic context

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See Fam78a in Genome Data Viewer
Location:
2 B; 2 22.0 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (31932720..31977484, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (32045969..32087472, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene nucleoporin 214 Neighboring gene BTG3 associated nuclear protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_04165 Neighboring gene STARR-seq mESC enhancer starr_04166 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31889766-31889967 Neighboring gene predicted gene 13609 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31912916-31913099 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31917796-31918029 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31918647-31918863 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31920488-31920689 Neighboring gene microRNA 7674 Neighboring gene STARR-seq mESC enhancer starr_04167 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31934202-31934355 Neighboring gene STARR-positive B cell enhancer mm9_chr2:31936748-31937048 Neighboring gene predicted gene, 33126 Neighboring gene phospholipid phosphatase 7 (inactive) Neighboring gene STARR-seq mESC enhancer starr_04169 Neighboring gene VISTA enhancer mm194 Neighboring gene STARR-seq mESC enhancer starr_04172 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:32011222-32011331 Neighboring gene STARR-seq mESC enhancer starr_04177 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:32023467-32023668 Neighboring gene proline-rich coiled-coil 2B Neighboring gene STARR-seq mESC enhancer starr_04183 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:32036927-32037171 Neighboring gene predicted gene, 22192

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein FAM78A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399461.1 → NP_001386390.1  protein FAM78A

    Status: VALIDATED

    Source sequence(s)
    AL928893
    UniProtKB/Swiss-Prot
    Q8C552
    UniProtKB/TrEMBL
    A2ATN4
    Related
    ENSMUSP00000115010.2, ENSMUST00000139629.2

  2. NM_175511.5 → NP_780720.1  protein FAM78A

    See identical proteins and their annotated locations for NP_780720.1

    Status: VALIDATED

    Source sequence(s)
    AL928893
    Consensus CDS
    CCDS15905.1
    UniProtKB/Swiss-Prot
    Q8C552
    UniProtKB/TrEMBL
    A2ATN4
    Related
    ENSMUSP00000052826.7, ENSMUST00000056406.7

RNA

  1. NR_151493.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL928893

  2. NR_151494.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL928893

  3. NR_151495.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK041512, AK165375
    Related
    ENSMUST00000149300.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    31932720..31977484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239099.1 → XP_011237401.1  protein FAM78A isoform X1

    See identical proteins and their annotated locations for XP_011237401.1

    UniProtKB/Swiss-Prot
    Q8C552
    UniProtKB/TrEMBL
    A2ATN4

  2. XM_030251002.1 → XP_030106862.1  protein FAM78A isoform X2

RNA

  1. XR_003952794.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8C552.1 GenPept UniProtKB/Swiss-Prot:Q8C552

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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