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AI854703 expressed sequence AI854703 [ Mus musculus (house mouse) ]

Gene ID: 243373, updated on 2-Nov-2024

Summary

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Official Symbol
AI854703provided by MGI
Official Full Name
expressed sequence AI854703provided by MGI
Primary source
MGI:MGI:2141510
See related
Ensembl:ENSMUSG00000053297 AllianceGenome:MGI:2141510
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI182503; D630044C04
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in colon adult (RPKM 26.1), kidney adult (RPKM 13.2) and 9 other tissues See more
Orthologs
human all
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Genomic context

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See AI854703 in Genome Data Viewer
Location:
6 B2.3; 6 23.61 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (48603973..48610625)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (48628167..48633688)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene replication initiator 1 Neighboring gene STARR-positive B cell enhancer ABC_E6426 Neighboring gene zinc finger protein 775 Neighboring gene predicted gene, 38804 Neighboring gene STARR-positive B cell enhancer ABC_E9664 Neighboring gene GTPase, IMAP family member 8 Neighboring gene predicted gene, 44262

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein LOC728743 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402005.1 → NP_001388934.1  zinc finger protein LOC728743 homolog

    Status: VALIDATED

    Source sequence(s)
    AC154013
    UniProtKB/TrEMBL
    Q8BIN3
    Related
    ENSMUSP00000145982.2, ENSMUST00000095938.10

  2. NM_001402006.1 → NP_001388935.1  zinc finger protein LOC728743 homolog

    Status: VALIDATED

    Source sequence(s)
    AC154013
    UniProtKB/TrEMBL
    Q8BIN3

  3. NM_001402007.1 → NP_001388936.1  zinc finger protein LOC728743 homolog

    Status: VALIDATED

    Source sequence(s)
    AC154013
    UniProtKB/TrEMBL
    Q8BIN3

  4. NM_001402008.1 → NP_001388937.1  zinc finger protein LOC728743 homolog

    Status: VALIDATED

    Source sequence(s)
    AC154013
    UniProtKB/TrEMBL
    Q8BIN3
    Related
    ENSMUSP00000145812.2, ENSMUST00000154570.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    48603973..48610625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177737.2: Suppressed sequence

    Description
    NM_177737.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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