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TXLNGY taxilin gamma Y-linked (pseudogene) [ Homo sapiens (human) ]

Gene ID: 246126, updated on 2-Nov-2024

Summary

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Official Symbol
TXLNGYprovided by HGNC
Official Full Name
taxilin gamma Y-linked (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:18473
See related
Ensembl:ENSG00000291033 MIM:400031; AllianceGenome:HGNC:18473
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TXLNG2P; CYorf15A; CYorf15B
Summary
Predicted to enable syntaxin binding activity. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in prostate (RPKM 7.9), small intestine (RPKM 4.8) and 18 other tissues See more
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Genomic context

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See TXLNGY in Genome Data Viewer
Location:
Yq11.222-q11.223
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (19567358..19607170)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (20473918..20513732)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (21729244..21769056)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene BCL6 corepressor pseudogene 1 Neighboring gene BCL-6 corepressor-like Neighboring gene uncharacterized LOC105377223 Neighboring gene lysine demethylase 5D Neighboring gene uncharacterized LOC105377224

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee. Hughes JF, et al. Nature, 2005 Sep 1. PMID 16136134
  2. The full-ORF clone resource of the German cDNA Consortium. Bechtel S, et al. BMC Genomics, 2007 Oct 31. PMID 17974005, Free PMC Article
  3. Identification of genes related to Parkinson's disease using expressed sequence tags. Kim JM, et al. DNA Res, 2006 Dec 31. PMID 17213182
  4. Dependence of Human Colorectal Cells Lacking the FBW7 Tumor Suppressor on the Spindle Assembly Checkpoint. Bailey ML, et al. Genetics, 2015 Nov. PMID 26354767, Free PMC Article
  5. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. Prakash T, et al. PLoS One, 2010 Oct 12. PMID 20967262, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • lipopolysaccaride-specific response 5-like protein
  • taxilin gamma 2, pseudogene
  • taxilin gamma pseudogene, Y-linked

Clone Names

  • FLJ33216, MGC21662, MGC131732, DKFZp451G0616

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045128.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and spans the full extent of this pseudogene. There are no full-length transcripts representing this exon combination; it is predicted based on partial transcript alignments and on full-length alignments from the functional gene, GeneID:55787.
    Source sequence(s)
    AC009977, AC010889, AI828041, BM263181, CD242693, FY211499

  2. NR_045129.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks several 3' exons but contains an alternate 3' exon, compared to variant 1.
    Source sequence(s)
    AI129169, BM263181
    Related
    ENST00000447520.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    19567358..19607170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    20473918..20513732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001005852.2: Suppressed sequence

    Description
    NM_001005852.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9BZA5.3 GenPept UniProtKB/Swiss-Prot:Q9BZA5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials