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Hspbp1 HSPA (Hsp70) binding protein 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 246146, updated on 17-Aug-2024

Summary

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Official Symbol
Hspbp1provided by RGD
Official Full Name
HSPA (Hsp70) binding protein 1provided by RGD
Primary source
RGD:628677
See related
EnsemblRapid:ENSRNOG00000017795 AllianceGenome:RGD:628677
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable adenyl-nucleotide exchange factor activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and positive regulation of protein ubiquitination. Orthologous to human HSPBP1 (HSPA (Hsp70) binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 147.1), Kidney (RPKM 110.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Hspbp1 in Genome Data Viewer
Location:
1q12
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (78194067..78217836)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (69165394..69189062)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (72732418..72756087)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 150B Neighboring gene BR serine/threonine kinase 1 Neighboring gene uncharacterized LOC108349434 Neighboring gene protein phosphatase 6, regulatory subunit 1 Neighboring gene transmembrane protein 86B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Isolation and characterization of isoforms of HspBP1, inhibitors of Hsp70. Raynes DA, et al. Biochim Biophys Acta, 2000 Jan 31. PMID 10786638
  2. CHIP protects from the neurotoxicity of expanded and wild-type ataxin-1 and promotes their ubiquitination and degradation. Al-Ramahi I, et al. J Biol Chem, 2006 Sep 8. PMID 16831871
  3. BAG-2 acts as an inhibitor of the chaperone-associated ubiquitin ligase CHIP. Arndt V, et al. Mol Biol Cell, 2005 Dec. PMID 16207813, Free PMC Article
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables adenyl-nucleotide exchange factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular sequestering activity ISO
Inferred from Sequence Orthology
more info
  
enables ubiquitin protein ligase binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of protein ubiquitination ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in extracellular space ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
hsp70-binding protein 1
Names
HSPA (heat shock 70) binding protein, cytoplasmic cochaperone 1
HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
HSPA binding protein, cytoplasmic cochaperone 1
heat shock protein-binding protein 1
hsp70-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_139261.1 → NP_640354.1  hsp70-binding protein 1

    See identical proteins and their annotated locations for NP_640354.1

    Status: PROVISIONAL

    Source sequence(s)
    AF187860
    UniProtKB/Swiss-Prot
    Q6IMX7
    Related
    ENSRNOP00000024251.3, ENSRNOT00000024251.7
    Conserved Domains (3) summary
    cd00020
    Location:198 → 299
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam08609
    Location:43 → 137
    Fes1; Nucleotide exchange factor Fes1
    sd00043
    Location:135 → 172
    ARM; armadillo repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    78194067..78217836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006228250.5 → XP_006228312.1  hsp70-binding protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006228312.1

    UniProtKB/Swiss-Prot
    Q6IMX7, Q9JLF4
    UniProtKB/TrEMBL
    A6KNM8
    Conserved Domains (3) summary
    cd00020
    Location:198 → 299
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam08609
    Location:43 → 137
    Fes1; Nucleotide exchange factor Fes1
    sd00043
    Location:135 → 172
    ARM; armadillo repeat [structural motif]

  2. XM_063280943.1 → XP_063137013.1  hsp70-binding protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q6IMX7, Q9JLF4
    UniProtKB/TrEMBL
    A6KNM8

  3. XM_006228248.2 → XP_006228310.1  hsp70-binding protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006228310.1

    UniProtKB/Swiss-Prot
    Q6IMX7, Q9JLF4
    UniProtKB/TrEMBL
    A6KNM8
    Conserved Domains (3) summary
    cd00020
    Location:198 → 299
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam08609
    Location:43 → 137
    Fes1; Nucleotide exchange factor Fes1
    sd00043
    Location:135 → 172
    ARM; armadillo repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6IMX7.1 GenPept UniProtKB/Swiss-Prot:Q6IMX7

Gene LinkOut

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