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Prokr2 prokineticin receptor 2 [ Mus musculus (house mouse) ]

Gene ID: 246313, updated on 2-Nov-2024

Summary

Official Symbol
Prokr2provided by MGI
Official Full Name
prokineticin receptor 2provided by MGI
Primary source
MGI:MGI:2181363
See related
Ensembl:ENSMUSG00000050558 AllianceGenome:MGI:2181363
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
PKR2; Gpr73l1; Gpcr73l1; EG-VEGRF2; B830005M06Rik
Summary
Predicted to enable G protein-coupled receptor activity. Acts upstream of or within circadian rhythm. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; hemolymphoid system gland; nose; pharynx; and reproductive system. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 3 with or without anosmia. Orthologous to human PROKR2 (prokineticin receptor 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in frontal lobe adult (RPKM 1.4), CNS E18 (RPKM 1.3) and 7 other tissues See more
Orthologs
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Genomic context

See Prokr2 in Genome Data Viewer
Location:
2 F2; 2 64.15 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (132211625..132227413, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (132369705..132385502, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:132079079-132079188 Neighboring gene STARR-positive B cell enhancer ABC_E331 Neighboring gene expressed sequence AV099323 Neighboring gene predicted gene, 46766 Neighboring gene STARR-seq mESC enhancer starr_05740 Neighboring gene CDP-diacylglycerol synthase 2 Neighboring gene STARR-positive B cell enhancer ABC_E5987 Neighboring gene STARR-seq mESC enhancer starr_05741 Neighboring gene STARR-seq mESC enhancer starr_05742 Neighboring gene RIKEN cDNA 4921508D12 gene Neighboring gene VISTA enhancer mm1391 Neighboring gene predicted gene 14095

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables G protein-coupled receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables G protein-coupled receptor activity TAS
Traceable Author Statement
more info
PubMed 
enables neuropeptide Y receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within G protein-coupled receptor signaling pathway TAS
Traceable Author Statement
more info
PubMed 
involved_in circadian rhythm IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within circadian rhythm IDA
Inferred from Direct Assay
more info
PubMed 
involved_in neuropeptide signaling pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
prokineticin receptor 2
Names
G protein-coupled receptor 73-like 1
PK-R2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144944.3NP_659193.3  prokineticin receptor 2

    See identical proteins and their annotated locations for NP_659193.3

    Status: VALIDATED

    Source sequence(s)
    AL807793, BB844646, BC043116
    Consensus CDS
    CCDS16773.1
    UniProtKB/Swiss-Prot
    A2AMQ8, Q80XQ0, Q8BIR4, Q8K458
    UniProtKB/TrEMBL
    Q6GTF8
    Related
    ENSMUSP00000056659.8, ENSMUST00000049997.14
    Conserved Domains (1) summary
    cd15204
    Location:51341
    7tmA_prokineticin-R; prokineticin receptors, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    132211625..132227413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239558.4XP_011237860.1  prokineticin receptor 2 isoform X3

    UniProtKB/TrEMBL
    E0CY28
    Related
    ENSMUSP00000124526.2, ENSMUST00000142766.2
    Conserved Domains (2) summary
    cd14964
    Location:526
    7tm_GPCRs; TM helix 4 [structural motif]
    cl28897
    Location:1180
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  2. XM_011239555.3XP_011237857.1  prokineticin receptor 2 isoform X1

    See identical proteins and their annotated locations for XP_011237857.1

    UniProtKB/Swiss-Prot
    A2AMQ8, Q80XQ0, Q8BIR4, Q8K458
    UniProtKB/TrEMBL
    Q6GTF8
    Related
    ENSMUSP00000105784.2, ENSMUST00000110156.2
    Conserved Domains (1) summary
    cd15204
    Location:51341
    7tmA_prokineticin-R; prokineticin receptors, member of the class A family of seven-transmembrane G protein-coupled receptors
  3. XM_011239557.3XP_011237859.1  prokineticin receptor 2 isoform X2

    Conserved Domains (2) summary
    cd14964
    Location:6687
    7tm_GPCRs; TM helix 4 [structural motif]
    cl28897
    Location:50241
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily