RT1-N1 RT1 class Ib, locus N1 [Rattus norvegicus (Norway rat)] - Gene

Summary

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Official Symbol: RT1-N1provided by RGD
Official Full Name: RT1 class Ib, locus N1provided by RGD
Primary source: RGD:3498
See related: AllianceGenome:RGD:3498
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: MHTLL
Annotation information: Note: GeneID 24748, defined by M74822.1, was annotated on chromosome 20 of NCBI's build 4.1 of the rat genome. This accession represents one of three similar RT1-N genes from the r21 haplotype of the major histocompatibility complex. The reference assembly, derived from the n haplotype, contains only two related RT1-N genes. Based on PubMed ID 15060004, this locus is not found on the reference assembly, which instead contains RT1-N2, GeneID 360323. [17 Jun 2014]; not in current annotation release
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Genomic context

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See RT1-N1 in Genome Data Viewer

Location:: 20p12

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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General protein information

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Preferred Names: RT1 class Ib, locus N1

Names: RT1 class Ib gene H2-TL-like grc region; RT1 class Ib gene, H2-TL-like, grc region (N1)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_012646.1 → NP_036778.1 RT1 class Ib, locus N1 precursor

See identical proteins and their annotated locations for NP_036778.1

Status: PROVISIONAL

Source sequence(s)

M74822

UniProtKB/TrEMBL

A0A8J8XQ64, Q31277

Conserved Domains (2) summary

cd07698
Location:205 → 297

IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

cl08246
Location:31 → 201

MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2