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Mpt1_RS00855 YfbR-like 5'-deoxynucleotidase [ Candidatus Methanoplasma termitum ]

Gene ID: 24817845, updated on 22-Oct-2024

Summary

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Gene symbol
Mpt1_RS00855
Gene description
YfbR-like 5'-deoxynucleotidase
Locus tag
Mpt1_RS00855
Gene type
protein coding
Organism
Candidatus Methanoplasma termitum (strain: MpT1)
Lineage
Archaea; Methanobacteriati; Thermoplasmatota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Candidatus Methanoplasma
Old locus tag
Mpt1_c01700
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Genomic context

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NZ_CP010070.1Genomic Context describing neighboring genes Neighboring gene pyridoxal phosphate-dependent aminotransferase Neighboring gene hypothetical protein Neighboring gene serine--tRNA ligase Neighboring gene YhbY family RNA-binding protein Neighboring gene ribonuclease P protein component 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP010070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The deoxycytidine pathway for thymidylate synthesis in Escherichia coli. Weiss B. J Bacteriol, 2007 Nov. PMID 17827303, Free PMC Article
  2. Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from Escherichia coli. Zimmerman MD, et al. J Mol Biol, 2008 Apr 18. PMID 18353368, Free PMC Article
  3. A widespread pathway for substitution of adenine by diaminopurine in phage genomes. Zhou Y, et al. Science, 2021 Apr 30. PMID 33926954
  4. Enzyme genomics: Application of general enzymatic screens to discover new enzymes. Kuznetsova E, et al. FEMS Microbiol Rev, 2005 Apr. PMID 15808744
  5. General enzymatic screens identify three new nucleotidases in Escherichia coli. Biochemical characterization of SurE, YfbR, and YjjG. Proudfoot M, et al. J Biol Chem, 2004 Dec 24. PMID 15489502

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
YfbR-like 5'-deoxynucleotidase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP010070.1 Reference assembly

    Range
    183567..184721
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_048111398.1 YfbR-like 5'-deoxynucleotidase [Candidatus Methanoplasma termitum]

    See identical proteins and their annotated locations for WP_048111398.1

    UniProtKB/TrEMBL
    A0A0A7LEY7
    Conserved Domains (2) summary
    COG4940
    Location:16 → 172
    ComGF; Competence protein ComGF [Mobilome: prophages, transposons]
    cl21469
    Location:194 → 291
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
Nucleotide Protein
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