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taf13 transcription factor TFIID complex subunit Taf13 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2538695, updated on 18-Sep-2024

Summary

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Official Symbol
taf13
Official Full Name
transcription factor TFIID complex subunit Taf13
Primary source
PomBase:SPCC1494.02c
Locus tag
SPOM_SPCC1494.02C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See taf13 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003421.2 (2317999..2319040, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cytosine deaminase Neighboring gene Fe/ascorbate oxidoreductase family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene retrotransposable element/transposon Tf2-type Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TORC1 and TORC2 converge to regulate the SAGA co-activator in response to nutrient availability. Laboucarié T, et al. EMBO Rep, 2017 Dec. PMID 29079657, Free PMC Article
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity EXP
Inferred from Experiment
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA polymerase II preinitiation complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription initiation at RNA polymerase II promoter EXP
Inferred from Experiment
more info
 PubMed 
Component Evidence Code Pubs
is_active_in chromatin IC
Inferred by Curator
more info
  
part_of transcription factor TFIID complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of transcription factor TFIID complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TFIID complex subunit Taf13

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    2317999..2319040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023515.4 → NP_588527.2  transcription factor TFIID complex subunit Taf13 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588527.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60076
    Conserved Domains (1) summary
    cl02174
    Location:10 → 97
    TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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