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hif2 Set3 complex subunit Hif2 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2538701, updated on 18-Sep-2024

Summary

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Official Symbol
hif2
Official Full Name
Set3 complex subunit Hif2
Primary source
PomBase:SPCC1235.09
Locus tag
SPOM_SPCC1235.09
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See hif2 in Genome Data Viewer
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003421.2 (194364..196528)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene kinetochore protein fta7 Neighboring gene ncRNA Neighboring gene protein pdh1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene exocyst complex subunit Exo3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The SET domain protein, Set3p, promotes the reliable execution of cytokinesis in Schizosaccharomyces pombe. Rentas S, et al. PLoS One, 2012. PMID 22347452, Free PMC Article
  2. A conserved histone deacetylase with a role in the regulation of cytokinesis in Schizosaccharomyces pombe. Grewal C, et al. Cell Div, 2012 May 4. PMID 22559741, Free PMC Article
  3. The conserved Fanconi anemia nuclease Fan1 and the SUMO E3 ligase Pli1 act in two novel Pso2-independent pathways of DNA interstrand crosslink repair in yeast. Fontebasso Y, et al. DNA Repair (Amst), 2013 Dec. PMID 24192486, Free PMC Article
  4. Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment. Shevchenko A, et al. Genome Biol, 2008. PMID 19040720, Free PMC Article
  5. Promoter nucleosome dynamics regulated by signalling through the CTD code. Materne P, et al. Elife, 2015 Jun 22. PMID 26098123, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables transcription corepressor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in negative regulation of gene expression, epigenetic IC
Inferred by Curator
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of Rpd3L-Expanded complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of Set3 complex EXP
Inferred from Experiment
more info
 PubMed 
part_of Set3 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Set3 complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Set3 complex subunit Hif2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    194364..196528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022730.3 → NP_587735.1  Set3 complex subunit Hif2 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587735.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74845
    Conserved Domains (4) summary
    COG2319
    Location:263 → 524
    WD40; WD40 repeat [General function prediction only]
    pfam08513
    Location:4 → 30
    LisH; LisH
    sd00039
    Location:267 → 301
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:267 → 523
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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