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spf30 splicing factor Spf30 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2538711, updated on 18-Sep-2024

Summary

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Official Symbol
spf30
Official Full Name
splicing factor Spf30
Primary source
PomBase:SPCC1281.02c
Locus tag
SPOM_SPCC1281.02C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See spf30 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (1382055..1383544, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cell wall alpha-1,3-glucan synthase Ags1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene chaperone EMC4 Neighboring gene pyridoxal reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Splicing factor Spf30 assists exosome-mediated gene silencing in fission yeast. Bernard P, et al. Mol Cell Biol, 2010 Mar. PMID 20028739, Free PMC Article
  2. TDRD3 is an effector molecule for arginine-methylated histone marks. Yang Y, et al. Mol Cell, 2010 Dec 22. PMID 21172665, Free PMC Article
  3. Dim1p is required for efficient splicing and export of mRNA encoding lid1p, a component of the fission yeast anaphase-promoting complex. Carnahan RH, et al. Eukaryot Cell, 2005 Mar. PMID 15755920, Free PMC Article
  4. The histone variant H2A.Z promotes splicing of weak introns. Nissen KE, et al. Genes Dev, 2017 Apr 1. PMID 28446597, Free PMC Article
  5. Systematic two-hybrid and comparative proteomic analyses reveal novel yeast pre-mRNA splicing factors connected to Prp19. Ren L, et al. PLoS One, 2011 Feb 28. PMID 21386897, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in spliceosomal tri-snRNP complex assembly ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
splicing factor Spf30

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1382055..1383544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023155.3 → NP_588166.1  splicing factor Spf30 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588166.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94519
    Conserved Domains (1) summary
    smart00333
    Location:75 → 136
    TUDOR; Tudor domain
Nucleotide Protein
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