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rpb3 DNA-directed RNA polymerase II complex subunit Rpb3 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2538816, updated on 18-Sep-2024

Summary

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Official Symbol
rpb3
Official Full Name
DNA-directed RNA polymerase II complex subunit Rpb3
Primary source
PomBase:SPCC1442.10c
Locus tag
SPOM_SPCC1442.10C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See rpb3 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003421.2 (1782897..1786998, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cytochrome c oxidase subunit VIb Neighboring gene anthranilate synthase component I Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene mitochondrial 54S ribosomal protein mL61 Neighboring gene tRNA-Pro Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional analysis of RNA polymerase II Rpb3 mutants of the fission yeast Schizosaccharomyces pombe. Mitobe J, et al. Curr Genet, 2001 Jun. PMID 11453250
  2. [Mapping the interaction site of Rpb2 and Rpb3 subunit of fission yeast RNA polymerase II]. Qu Z, et al. Wei Sheng Wu Xue Bao, 2001 Oct. PMID 12552808
  3. Molecular assembly of RNA polymerase II from the fission yeast Schizosaccharomyces pombe: subunit-subunit contact network involving Rpb5. Miyao T, et al. Genes Cells, 1996 Sep. PMID 9077438
  4. Isolation and characterization of temperature-sensitive mutations in the gene (rpb3) for subunit 3 of RNA polymerase II in the fission yeast Schizosaccharomyces pombe. Mitobe J, et al. Mol Gen Genet, 1999 Aug. PMID 10503538
  5. Mapping of Rpb3 and Rpb5 contact sites on two large subunits, Rpb1 and Rpb2, of the RNA polymerase II from fission yeast. Miyao T, et al. Mol Gen Genet, 1998 Jul. PMID 9738888

See all (30) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by PomBase

Function Evidence Code Pubs
contributes_to DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
contributes_to RNA polymerase II activity EXP
Inferred from Experiment
more info
 PubMed 
contributes_to RNA polymerase II activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II EXP
Inferred from Experiment
more info
 PubMed 
involved_in transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of RNA polymerase II, core complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of RNA polymerase II, core complex IMP
Inferred from Mutant Phenotype
more info
 PubMed 
part_of RNA polymerase II, holoenzyme EXP
Inferred from Experiment
more info
 PubMed 
is_active_in chromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II complex subunit Rpb3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1782897..1786998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023315.3 → NP_588324.1  DNA-directed RNA polymerase II complex subunit Rpb3 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588324.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P37382, P78959, P78960, Q9UUM9
    Conserved Domains (1) summary
    cd07031
    Location:6 → 266
    RNAP_II_RPB3; RPB3 subunit of Eukaryotic RNA polymerase II
Nucleotide Protein
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