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ribose-phosphate pyrophosphokinase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2538924, updated on 18-Sep-2024

Summary

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Official Full Name
ribose-phosphate pyrophosphokinase
Primary source
PomBase:SPCC1620.06c
Locus tag
SPOM_SPCC1620.06C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003421.2 (2152833..2155107, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene protein mug163 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Rab geranylgeranyltransferase alpha subunit Neighboring gene protein lunapark Neighboring gene ncRNA Neighboring gene succinate-CoA ligase beta subunit Lsc2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article
  2. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article
  3. A non-transcriptional role for the glucocorticoid receptor in mediating the cell stress response. Ptushkina M, et al. Sci Rep, 2017 Sep 21. PMID 28935859, Free PMC Article
  4. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ribose phosphate diphosphokinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in 5-phosphoribose 1-diphosphate biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in purine nucleotide biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in ribonucleoside monophosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
part_of ribose phosphate diphosphokinase complex ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
ribose-phosphate pyrophosphokinase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    2152833..2155107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023455.3 → NP_588464.1  ribose-phosphate pyrophosphokinase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588464.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94413
    Conserved Domains (3) summary
    COG0462
    Location:4 → 316
    PrsA; Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism, Amino acid transport and metabolism]
    pfam13793
    Location:6 → 122
    Pribosyltran_N; N-terminal domain of ribose phosphate pyrophosphokinase
    cl00309
    Location:169 → 316
    PRTases_typeI; Phosphoribosyl transferase (PRT)-type I domain
Nucleotide Protein
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