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opt3 OPT oligopeptide transporter family protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2538969, updated on 22-Jun-2024

Summary

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Gene symbol
opt3
Gene description
OPT oligopeptide transporter family protein
Locus tag
SPOM_SPCC1840.12
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPCC965.02
Old locus tag
SPCC1840.12
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Genomic context

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See opt3 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (2281612..2284101)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene U6 snRNP-associated protein Lsm8 Neighboring gene ncRNA Neighboring gene exosome subunit Csl4 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene V-type ATPase V1 subunit D Neighboring gene i-AAA protease Yme1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables oligopeptide transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in oligopeptide transmembrane transport ISM
Inferred from Sequence Model
more info
  
involved_in peptide transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
OPT oligopeptide transporter family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    2281612..2284101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023501.1 → NP_588512.2  OPT oligopeptide transporter family protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588512.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q7LL00
    Conserved Domains (1) summary
    TIGR00728
    Location:89 → 753
    OPT_sfam; oligopeptide transporter, OPT superfamily
Nucleotide Protein
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