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pep3 ubiquitin-protein ligase E3 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539053, updated on 18-Sep-2024

Summary

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Official Symbol
pep3
Official Full Name
ubiquitin-protein ligase E3
Primary source
PomBase:SPCC790.02
Locus tag
SPOM_SPCC790.02
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
vps18
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Genomic context

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See pep3 in Genome Data Viewer
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003421.2 (2242313..2245648)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene transcription factor TFIIIB complex subunit Bdp1 Neighboring gene ncRNA Neighboring gene histone H2B-K119 ubiquitin ligase complex (HULC) subunit, ubiquitin-protein ligase E3 Brl1 Neighboring gene ncRNA Neighboring gene Golgi rhomboid protease Rbd2 Neighboring gene Ran GTPase-binding protein Mog1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The fission yeast FLCN/FNIP complex augments TORC1 repression or activation in response to amino acid (AA) availability. Calvo IA, et al. iScience, 2021 Nov 19. PMID 34805795, Free PMC Article
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ubiquitin protein ligase activity ISM
Inferred from Sequence Model
more info
  
enables zinc ion binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in Golgi to endosome transport ISO
Inferred from Sequence Orthology
more info
  
involved_in endosome organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in late endosome to vacuole transport ISO
Inferred from Sequence Orthology
more info
  
involved_in organelle fusion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vacuole organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vesicle docking involved in exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vesicle tethering ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of CORVET complex ISO
Inferred from Sequence Orthology
more info
  
part_of HOPS complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cell division site HDA PubMed 
is_active_in cytoplasm HDA PubMed 
is_active_in cytosol HDA PubMed 
is_active_in endosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ubiquitin-protein ligase E3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    2242313..2245648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023488.3 → NP_588498.1  ubiquitin-protein ligase E3 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588498.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74925
    Conserved Domains (1) summary
    pfam05131
    Location:282 → 415
    Pep3_Vps18; Pep3/Vps18/deep orange family
Nucleotide Protein
Heading Accession and Version

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