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asr1 ubiquitin-protein ligase E3 Asr1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539058, updated on 18-Sep-2024

Summary

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Official Symbol
asr1
Official Full Name
ubiquitin-protein ligase E3 Asr1
Primary source
PomBase:SPCC126.07c
Locus tag
SPOM_SPCC126.07C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
pbr1
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Genomic context

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See asr1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (2127413..2129524, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene mitochondrial 54S ribosomal protein mL46 Neighboring gene ncRNA Neighboring gene twinfilin Neighboring gene lectin family glycoprotein receptor Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Modulation of RNA polymerase II subunit composition by ubiquitylation. Daulny A, et al. Proc Natl Acad Sci U S A, 2008 Dec 16. PMID 19064926, Free PMC Article
  2. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article
  3. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ubiquitin protein ligase activity ISO
Inferred from Sequence Orthology
more info
 PubMed 
enables zinc ion binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
ubiquitin-protein ligase E3 Asr1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    2127413..2129524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023441.3 → NP_588450.1  ubiquitin-protein ligase E3 Asr1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588450.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94400
    Conserved Domains (2) summary
    cd15536
    Location:124 → 167
    PHD_PHRF1; PHD finger found in PHD and RING finger domain-containing protein 1 (PHRF1)
    pfam13639
    Location:16 → 79
    zf-RING_2; Ring finger domain
Nucleotide Protein
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