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ipi1 rRNA processing protein Ipi1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539247, updated on 18-Sep-2024

Summary

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Official Symbol
ipi1
Official Full Name
rRNA processing protein Ipi1
Primary source
PomBase:SPCC1393.06c
Locus tag
SPOM_SPCC1393.06C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See ipi1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003421.2 (804483..806085, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RNA-silencing factor Ers1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein mug4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Roles of fission yeast Grc3 protein in ribosomal RNA processing and heterochromatic gene silencing. Kitano E, et al. J Biol Chem, 2011 Apr 29. PMID 21385875, Free PMC Article
  2. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in rRNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in heterochromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of rixosome complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of rixosome complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
rRNA processing protein Ipi1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    804483..806085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022955.4 → NP_587964.2  rRNA processing protein Ipi1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587964.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94718
    Conserved Domains (1) summary
    pfam12333
    Location:137 → 234
    Ipi1_N; Rix1 complex component involved in 60S ribosome maturation
Nucleotide Protein
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