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nip7 RNA-binding and ribosome biogenesis protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539255, updated on 18-Sep-2024

Summary

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Official Symbol
nip7
Official Full Name
RNA-binding and ribosome biogenesis protein
Primary source
PomBase:SPCC320.11c
Locus tag
SPOM_SPCC320.11C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPCC330.18
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Genomic context

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See nip7 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003421.2 (144380..145562)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Aurora-B kinase Ark1 Neighboring gene ncRNA Neighboring gene peptidase Atp23 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene signal recognition particle subunit Srp72

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding NAS
Non-traceable Author Statement
more info
  
Process Evidence Code Pubs
involved_in assembly of large subunit precursor of preribosome ISO
Inferred from Sequence Orthology
more info
  
involved_in ribosomal large subunit biogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleolus HDA PubMed 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus HDA PubMed 
part_of preribosome, large subunit precursor IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RNA-binding and ribosome biogenesis protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    144380..145562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022713.3 → NP_587718.1  RNA-binding and ribosome biogenesis protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587718.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q1MTQ9
    Conserved Domains (1) summary
    COG1374
    Location:1 → 177
    NIP7; Rbosome biogenesis protein Nip4, contains PUA domain [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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