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sec5 exocyst complex subunit Sec5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539341, updated on 18-Sep-2024

Summary

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Official Symbol
sec5
Official Full Name
exocyst complex subunit Sec5
Primary source
PomBase:SPCC622.10c
Locus tag
SPOM_SPCC622.10C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
exo2
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Genomic context

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See sec5 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (1413420..1416194, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene histone H2A alpha Neighboring gene histone H2B Htb1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene plasma membrane LMBR1-like multi-pass membrane protein, human LMBRD2 ortholog, implicated in signaling Neighboring gene ncRNA Neighboring gene NADP-specific glutamate dehydrogenase Gdh1 Neighboring gene TTT co-chaperone complex, armadillo-type fold subunit Tti1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article
  2. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in Golgi to plasma membrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vesicle tethering involved in exocytosis IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
is_active_in cell division site HDA PubMed 
is_active_in cell tip HDA PubMed 
part_of exocyst IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
exocyst complex subunit Sec5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    1413420..1416194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023172.3 → NP_588182.1  exocyst complex subunit Sec5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588182.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94598
    Conserved Domains (1) summary
    pfam15469
    Location:139 → 329
    Sec5; Exocyst complex component Sec5
Nucleotide Protein
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