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scw1 RNA-binding protein Scw1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539358, updated on 18-Sep-2024

Summary

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Official Symbol
scw1
Official Full Name
RNA-binding protein Scw1
Primary source
PomBase:SPCC16C4.07
Locus tag
SPOM_SPCC16C4.07
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See scw1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (673476..675251)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene tRNA pseudouridine synthase Neighboring gene Rnase P/MRP subunit Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene p21-activated protein kinase inhibitor Skb15 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Rho-GEF Gef3 interacts with the septin complex and activates the GTPase Rho4 during fission yeast cytokinesis. Wang N, et al. Mol Biol Cell, 2015 Jan 15. PMID 25411334, Free PMC Article
  2. The Scw1 RNA-binding domain protein regulates septation and cell-wall structure in fission yeast. Karagiannis J, et al. Genetics, 2002 Sep. PMID 12242222, Free PMC Article
  3. Scw1p antagonizes the septation initiation network to regulate septum formation and cell separation in the fission yeast Schizosaccharomyces pombe. Jin QW, et al. Eukaryot Cell, 2003 Jun. PMID 12796296, Free PMC Article
  4. Cell-type specific regulator RBPMS switches alternative splicing via higher-order oligomerization and heterotypic interactions with other splicing regulators. Yang Y, et al. Nucleic Acids Res, 2023 Oct 13. PMID 37548402, Free PMC Article
  5. Cooperation between the septins and the actomyosin ring and role of a cell-integrity pathway during cell division in fission yeast. Wu JQ, et al. Genetics, 2010 Nov. PMID 20739711, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA processing ISO
Inferred from Sequence Orthology
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm HDA PubMed 
is_active_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein Scw1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    673476..675251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022908.2 → NP_587917.1  RNA-binding protein Scw1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587917.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74452
    Conserved Domains (2) summary
    COG0724
    Location:347 → 485
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12245
    Location:424 → 502
    RRM_scw1_like; RNA recognition motif in yeast cell wall integrity protein scw1 and similar proteins
Nucleotide Protein
Heading Accession and Version

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