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hdd1 metal-dependent HD domain-containing phosphohydrolase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539410, updated on 18-Sep-2024

Summary

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Official Symbol
hdd1
Official Full Name
metal-dependent HD domain-containing phosphohydrolase
Primary source
PomBase:SPCC4G3.17
Locus tag
SPOM_SPCC4G3.17
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See hdd1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (438715..439828, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene gamma tubulin complex GCP6 subunit Alp16 Neighboring gene ncRNA Neighboring gene ribosome biogenesis protein Rix1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene bifunctional CMP deaminase family methyltransferase/riboflavin-specific deaminase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways. Das J, et al. Sci Signal, 2013 May 21. PMID 23695164, Free PMC Article
  2. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  3. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables 5'-deoxynucleotidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GMP 5'-nucleotidase activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in deoxyribonucleoside monophosphate catabolic process ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
metal-dependent HD domain-containing phosphohydrolase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    438715..439828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022814.3 → NP_587821.1  metal-dependent HD domain-containing phosphohydrolase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587821.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P87242
    Conserved Domains (1) summary
    COG1896
    Location:5 → 195
    YfbR; 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases [Nucleotide transport and metabolism, General function prediction only]
Nucleotide Protein
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