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thp1 uracil DNA N-glycosylase Thp1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539432, updated on 18-Sep-2024

Summary

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Official Symbol
thp1
Official Full Name
uracil DNA N-glycosylase Thp1
Primary source
PomBase:SPCC965.05c
Locus tag
SPOM_SPCC965.05C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See thp1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (2290888..2292139, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene V-type ATPase V1 subunit D Neighboring gene i-AAA protease Yme1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene potassium channel subunit Neighboring gene glutathione S-transferase Gst2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repair of deaminated base damage by Schizosaccharomyces pombe thymine DNA glycosylase. Dong L, et al. DNA Repair (Amst), 2008 Dec 1. PMID 18789404
  2. The versatile thymine DNA-glycosylase: a comparative characterization of the human, Drosophila and fission yeast orthologs. Hardeland U, et al. Nucleic Acids Res, 2003 May 1. PMID 12711670, Free PMC Article
  3. Nucleocytoplasmic transport in the midzone membrane domain controls yeast mitotic spindle disassembly. Lucena R, et al. J Cell Biol, 2015 May 11. PMID 25963819, Free PMC Article
  4. The fission yeast nucleoporin Alm1 is required for proteasomal degradation of kinetochore components. Salas-Pino S, et al. J Cell Biol, 2017 Nov 6. PMID 28974540, Free PMC Article
  5. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables G/U mismatch-specific uracil-DNA glycosylase activity IEA
Inferred from Electronic Annotation
more info
  
enables hypoxanthine DNA N-glycosylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables oxanine DNA N-glycosylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables pyrimidine-specific mismatch base pair DNA N-glycosylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables uracil DNA N-glycosylase activity EXP
Inferred from Experiment
more info
 PubMed 
enables uracil DNA N-glycosylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables uracil DNA N-glycosylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables xanthine DNA N-glycosylase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair, AP site formation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
uracil DNA N-glycosylase Thp1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    2290888..2292139 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023504.3 → NP_588515.1  uracil DNA N-glycosylase Thp1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_588515.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O59825
    Conserved Domains (1) summary
    cl00483
    Location:5 → 325
    UDG_like; Uracil-DNA glycosylases (UDG) and related enzymes
Nucleotide Protein
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