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rhp42 DNA repair protein Rhp42 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539465, updated on 18-Sep-2024

Summary

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Official Symbol
rhp42
Official Full Name
DNA repair protein Rhp42
Primary source
PomBase:SPCC4G3.10c
Locus tag
SPOM_SPCC4G3.10C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
rhp4b
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Genomic context

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See rhp42 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (451795..454813)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein nur1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene GTPase-activating protein Gyp3 Neighboring gene serine/threonine protein kinase S6K family Psk1 Neighboring gene ncRNA Neighboring gene PHD finger domain-containing protein Phf1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two budding yeast RAD4 homologs in fission yeast play different roles in the repair of UV-induced DNA damage. Fukumoto Y, et al. DNA Repair (Amst), 2002 Oct 1. PMID 12531030
  2. Repair of damaged and mismatched DNA by the XPC homologues Rhp41 and Rhp42 of fission yeast. Marti TM, et al. Genetics, 2003 Jun. PMID 12807767, Free PMC Article
  3. Phosphorylation of the RNA-binding protein Zfs1 modulates sexual differentiation in fission yeast. Navarro FJ, et al. J Cell Sci, 2017 Dec 15. PMID 29084823, Free PMC Article
  4. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables damaged DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables single-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mismatch repair IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mismatch repair IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in nucleotide-excision repair IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in nucleotide-excision repair IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of XPC complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleolus HDA PubMed 
part_of nucleotide-excision repair factor 2 complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DNA repair protein Rhp42

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    451795..454813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022821.3 → NP_587828.1  DNA repair protein Rhp42 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587828.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P87235
    Conserved Domains (5) summary
    TIGR00605
    Location:3 → 686
    rad4; DNA repair protein rad4
    pfam03835
    Location:288 → 436
    Rad4; Rad4 transglutaminase-like domain
    pfam10403
    Location:445 → 498
    BHD_1; Rad4 beta-hairpin domain 1
    pfam10404
    Location:502 → 564
    BHD_2; Rad4 beta-hairpin domain 2
    pfam10405
    Location:571 → 641
    BHD_3; Rad4 beta-hairpin domain 3
Nucleotide Protein
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