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meu7 alpha-amylase 4 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539749, updated on 10-Jul-2024

Summary

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Gene symbol
meu7
Gene description
alpha-amylase 4
Locus tag
SPOM_SPBC16A3.13
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
aah4
Old locus tag
SPBC16A3.13
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Genomic context

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See meu7 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (4272341..4274665, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene tubulin alpha 1 Neighboring gene mitochondrial ribosomal protein subunit S26 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene triglyceride lipase-cholesterol esterase Neighboring gene mitotic cohesin N-acetyltransferase/DNA polymerase eta Eso1 fusion protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global coordination of transcriptional control and mRNA decay during cellular differentiation. Amorim MJ, et al. Mol Syst Biol, 2010 Jun 8. PMID 20531409, Free PMC Article
  2. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
  
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in fungal-type cell wall biogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in external side of plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
alpha-amylase 4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    4272341..4274665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023797.1 → NP_596776.1  alpha-amylase 4 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596776.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O42918, Q96WR2
    Conserved Domains (3) summary
    COG0366
    Location:33 → 415
    AmyA; Glycosidase [Carbohydrate transport and metabolism]
    pfam09260
    Location:648 → 724
    DUF1966; Domain of unknown function (DUF1966)
    cl07893
    Location:434 → 631
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
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