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ogm4 ER membrane O-mannosyltransferase Ogm4 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539761, updated on 18-Sep-2024

Summary

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Official Symbol
ogm4
Official Full Name
ER membrane O-mannosyltransferase Ogm4
Primary source
PomBase:SPBC16C6.09
Locus tag
SPOM_SPBC16C6.09
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
oma4
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Genomic context

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See ogm4 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (4346559..4349272)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ubiquinol-cytochrome-c reductase complex subunit 8 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene heterochromatin (HP1) family chromodomain protein Chp2 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Protein O-mannosylation is crucial for cell wall integrity, septation and viability in fission yeast. Willer T, et al. Mol Microbiol, 2005 Jul. PMID 15948957
  2. Characterization of O-mannosyltransferase family in Schizosaccharomyces pombe. Tanaka N, et al. Biochem Biophys Res Commun, 2005 May 13. PMID 15809069
  3. High-Throughput Identification of Nuclear Envelope Protein Interactions in Schizosaccharomyces pombe Using an Arrayed Membrane Yeast-Two Hybrid Library. Varberg JM, et al. G3 (Bethesda), 2020 Dec 3. PMID 33109728, Free PMC Article
  4. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glycosyltransferase activity EXP
Inferred from Experiment
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
  
involved_in protein O-linked mannosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in endomembrane system IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in endoplasmic reticulum HDA PubMed 
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ER membrane O-mannosyltransferase Ogm4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    4346559..4349272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023828.3 → NP_596807.1  ER membrane O-mannosyltransferase Ogm4 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596807.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O42933, Q9US82
    Conserved Domains (4) summary
    smart00472
    Location:337 → 396
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:37 → 776
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:63 → 310
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:549 → 770
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
Nucleotide Protein
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