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nup85 nucleoporin Nup85 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539829, updated on 18-Sep-2024

Summary

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Official Symbol
nup85
Official Full Name
nucleoporin Nup85
Primary source
PomBase:SPBC17G9.04c
Locus tag
SPOM_SPBC17G9.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
ptr5
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Genomic context

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See nup85 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (2173656..2176430, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene WD repeat protein Neighboring gene ATP-dependent RNA helicase Prp16 Neighboring gene ncRNA Neighboring gene Cdc73 family RNA polymerase II accessory factor Neighboring gene ncRNA Neighboring gene lysine--tRNA (Lys) ligase Krs1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RRM-containing cyclophilin Rct1 Neighboring gene siderophore-iron biosynthesis protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Fun30 chromatin remodeler Fft3 controls nuclear organization and chromatin structure of insulators and subtelomeres in fission yeast. Steglich B, et al. PLoS Genet, 2015 Mar. PMID 25798942, Free PMC Article
  2. RNAi keeps Atf1-bound stress response genes in check at nuclear pores. Woolcock KJ, et al. Genes Dev, 2012 Apr 1. PMID 22431512, Free PMC Article
  3. The fission yeast Nup107-120 complex functionally interacts with the small GTPase Ran/Spi1 and is required for mRNA export, nuclear pore distribution, and proper cell division. Baï SW, et al. Mol Cell Biol, 2004 Jul. PMID 15226438, Free PMC Article
  4. Quantitative analysis of nuclear pore complex organization in Schizosaccharomyces pombe. Varberg JM, et al. Life Sci Alliance, 2022 Jul. PMID 35354597, Free PMC Article
  5. Molecular basis for Nup37 and ELY5/ELYS recruitment to the nuclear pore complex. Bilokapic S, et al. Proc Natl Acad Sci U S A, 2012 Sep 18. PMID 22955883, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables euchromatin binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mRNA export from nucleus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein import into nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in ribosomal subunit export from nucleus ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in euchromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in heterochromatin IDA
Inferred from Direct Assay
more info
 PubMed 
NOT is_active_in mitotic spindle pole body IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nuclear envelope HDA PubMed 
is_active_in nuclear periphery IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nuclear pore IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nuclear pore outer ring IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of nuclear pore outer ring IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleolar peripheral inclusion body IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
nucleoporin Nup85

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2173656..2176430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021800.3 → NP_595893.1  nucleoporin Nup85 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595893.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9UUE5
    Conserved Domains (1) summary
    pfam07575
    Location:70 → 644
    Nucleopor_Nup85; Nup85 Nucleoporin
Nucleotide Protein
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