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pol5 rRNA processing protein Pol5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539834, updated on 18-Sep-2024

Summary

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Official Symbol
pol5
Official Full Name
rRNA processing protein Pol5
Primary source
PomBase:SPBC14C8.14c
Locus tag
SPOM_SPBC14C8.14C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See pol5 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (2225986..2229029, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase subunit Rpb8 Neighboring gene SRR1 family protein, DNA-repair associated protein, Srr1, conflicting annotations across species Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene triglyceride lipase-cholesterol esterase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DNA polymerase 5 acetylation by Eso1 is essential for Schizosaccharomyces pombe viability. Chen Z, et al. Int J Mol Med, 2017 Dec. PMID 29039458
  2. Pol5p, a novel binding partner to Cdc10p in fission yeast involved in rRNA production. Nadeem FK, et al. Mol Genet Genomics, 2006 Oct. PMID 16816948
  3. Pol5 is required for recycling of small subunit biogenesis factors and for formation of the peptide exit tunnel of the large ribosomal subunit. Braun CM, et al. Nucleic Acids Res, 2020 Jan 10. PMID 31745560, Free PMC Article
  4. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
  5. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA polymerase I transcription regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables rDNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables rDNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
NOT involved_in nucleolar large rRNA transcription by RNA polymerase I ISO
Inferred from Sequence Orthology
more info
 PubMed 
involved_in rRNA processing ISO
Inferred from Sequence Orthology
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleolus HDA PubMed 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus HDA PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
rRNA processing protein Pol5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2225986..2229029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021825.3 → NP_595917.1  rRNA processing protein Pol5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595917.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60094, Q9UTU3
    Conserved Domains (1) summary
    pfam04931
    Location:40 → 800
    DNA_pol_phi; DNA polymerase phi
Nucleotide Protein
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