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dfg502 mannan endo-1,6-alpha-mannosidase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539836, updated on 22-Jun-2024

Summary

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Gene symbol
dfg502
Gene description
mannan endo-1,6-alpha-mannosidase
Locus tag
SPOM_SPBC1198.07C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
dfg5
Old locus tag
SPBC1198.07c
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Genomic context

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See dfg502 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (184591..186738, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene guanylate kinase Neighboring gene mannan endo-1,6-alpha-mannosidase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene dipeptidase Dug1 Neighboring gene asparagine--tRNA (Asn) ligase Slm5 Neighboring gene ubiquitin conjugating enzyme Ubc16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables mannan endo-1,6-alpha-mannosidase activity ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in fungal-type cell wall biogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in septum digestion after cytokinesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum HDA PubMed 
is_active_in external side of plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
mannan endo-1,6-alpha-mannosidase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    184591..186738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020982.3 → NP_595076.2  mannan endo-1,6-alpha-mannosidase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595076.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9P6I3
    Conserved Domains (1) summary
    pfam03663
    Location:29 → 372
    Glyco_hydro_76; Glycosyl hydrolase family 76
Nucleotide Protein
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