U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

atg9 autophagy-associated protein Atg9 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539850, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
atg9
Official Full Name
autophagy-associated protein Atg9
Primary source
PomBase:SPBC15D4.07c
Locus tag
SPOM_SPBC15D4.07C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
apg9
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See atg9 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3023343..3025771, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene nucleotide-binding domain-containing protein CobW/HypB/UreG Neighboring gene NatC N-acetyltransferase complex catalytic subunit Naa30 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene cystathionine gamma-synthase Neighboring gene ncRNA Neighboring gene nuclear rim protein Amo1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Atg9 is a lipid scramblase that mediates autophagosomal membrane expansion. Matoba K, et al. Nat Struct Mol Biol, 2020 Dec. PMID 33106658
  2. Atg38-Atg8 interaction in fission yeast establishes a positive feedback loop to promote autophagy. Yu ZQ, et al. Autophagy, 2020 Nov. PMID 31941401, Free PMC Article
  3. Autophagy-deficient Schizosaccharomyces pombe mutants undergo partial sporulation during nitrogen starvation. Mukaiyama H, et al. Microbiology (Reading), 2009 Dec. PMID 19778961
  4. Global analysis of fission yeast mating genes reveals new autophagy factors. Sun LL, et al. PLoS Genet, 2013. PMID 23950735, Free PMC Article
  5. Promoter nucleosome dynamics regulated by signalling through the CTD code. Materne P, et al. Elife, 2015 Jun 22. PMID 26098123, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables phospholipid scramblase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in autophagosome assembly ISO
Inferred from Sequence Orthology
more info
  
involved_in macroautophagy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mitophagy IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in piecemeal microautophagy of the nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein localization to phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in reticulophagy IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in autophagosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in fungal-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in phagophore assembly site IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in phagophore assembly site membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
autophagy-associated protein Atg9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3023343..3025771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022166.3 → NP_596247.1  autophagy-associated protein Atg9 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596247.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74312
    Conserved Domains (1) summary
    pfam04109
    Location:296 → 655
    APG9; Autophagy protein Apg9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials