U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rct1 RRM-containing cyclophilin Rct1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539942, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
rct1
Official Full Name
RRM-containing cyclophilin Rct1
Primary source
PomBase:SPBC17G9.05
Locus tag
SPOM_SPBC17G9.05
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
cyp6
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rct1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (2177773..2179449)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene nucleoporin Nup85 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene siderophore-iron biosynthesis protein Neighboring gene 40S ribosomal protein eS24 Neighboring gene ncRNA Neighboring gene centaurin Cnt5

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Rct1, a nuclear RNA recognition motif-containing cyclophilin, regulates phosphorylation of the RNA polymerase II C-terminal domain. Gullerova M, et al. Mol Cell Biol, 2007 May. PMID 17339332, Free PMC Article
  2. The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly. Chang AY, et al. Cell Rep, 2017 Jun 20. PMID 28636937, Free PMC Article
  3. SR protein kinases promote splicing of nonconsensus introns. Lipp JJ, et al. Nat Struct Mol Biol, 2015 Aug. PMID 26167880
  4. A non-transcriptional role for the glucocorticoid receptor in mediating the cell stress response. Ptushkina M, et al. Sci Rep, 2017 Sep 21. PMID 28935859, Free PMC Article
  5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Rct1 guides transcripts to the RNAi machinery by promoting splicing of elongating non-coding transcripts.
    Title: The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly.
  2. Data show that Rct1, a nuclear RNA recognition motif-containing cyclophilin, regulates phosphorylation of the RNA polymerase II C-terminal domain.
    Title: Rct1, a nuclear RNA recognition motif-containing cyclophilin, regulates phosphorylation of the RNA polymerase II C-terminal domain.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding NAS
Non-traceable Author Statement
more info
  
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in chromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
RRM-containing cyclophilin Rct1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2177773..2179449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021801.3 → NP_595894.1  RRM-containing cyclophilin Rct1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595894.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9UUE4
    Conserved Domains (3) summary
    COG0724
    Location:151 → 417
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd01921
    Location:4 → 176
    cyclophilin_RRM; cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain ...
    cd12235
    Location:241 → 323
    RRM_PPIL4; RNA recognition motif in peptidyl-prolyl cis-trans isomerase-like 4 (PPIase) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials