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SPOM_SPBC1271.05C zf-AN1 type zinc finger protein, involved in ER membrane translocation [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539988, updated on 22-Jun-2024

Summary

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Gene symbol
SPOM_SPBC1271.05C
Gene description
zf-AN1 type zinc finger protein, involved in ER membrane translocation
Locus tag
SPOM_SPBC1271.05C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Old locus tag
SPBC1271.05c
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Genomic context

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See SPOM_SPBC1271.05C in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (362850..364861)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene eIF-5A-deoxyhypusine synthase Neighboring gene NLI-interacting factor-like phosphatase family protein Neighboring gene ncRNA Neighboring gene oligosaccharyltransferase subunit Stt3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genetic screen to discover pathways affecting cohesin function in Schizosaccharomyces pombe identifies chromatin effectors. Chen Z, et al. G3 (Bethesda), 2012 Oct. PMID 23050226, Free PMC Article
  2. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
zf-AN1 type zinc finger protein, involved in ER membrane translocation

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    362850..364861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021053.3 → NP_595145.1  zf-AN1 type zinc finger protein, involved in ER membrane translocation [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595145.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94338
    Conserved Domains (2) summary
    smart00154
    Location:151 → 190
    ZnF_AN1; AN1-like Zinc finger
    COG3582
    Location:63 → 214
    COG3582; Predicted nucleic acid binding protein containing the AN1-type Zn-finger [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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