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atx1 Cu chaperone Atx1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540012, updated on 22-Jun-2024

Summary

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Gene symbol
atx1
Gene description
Cu chaperone Atx1
Locus tag
SPOM_SPBC1709.10C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Old locus tag
SPBC1709.10c
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Genomic context

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See atx1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (1119387..1120321, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene mRNA processing protein Cft1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene translation termination factor Rrf1 Neighboring gene chromatin modification family protein Png2 Neighboring gene ncRNA Neighboring gene GTPase-binding protein Rid1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Copper distributed by Atx1 is available to copper amine oxidase 1 in Schizosaccharomyces pombe. Peter C, et al. Eukaryot Cell, 2008 Oct. PMID 18723604, Free PMC Article
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables copper chaperone activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables copper chaperone activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in copper ion transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein maturation by copper ion transfer EXP
Inferred from Experiment
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
Cu chaperone Atx1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1119387..1120321 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021352.3 → NP_595443.1  Cu chaperone Atx1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595443.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74735
    Conserved Domains (1) summary
    cd00371
    Location:9 → 62
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
Nucleotide Protein
Heading Accession and Version

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