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scj1 DNAJ domain-containing protein Scj1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540021, updated on 18-Sep-2024

Summary

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Official Symbol
scj1
Official Full Name
DNAJ domain-containing protein Scj1
Primary source
PomBase:SPBC1347.05c
Locus tag
SPOM_SPBC1347.05C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See scj1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
4
Sequence:
Chromosome: II; NC_003423.3 (4069163..4070724, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene sporulation specific PIL domain protein Meu14 Neighboring gene ncRNA Neighboring gene TIM22 inner membrane protein import complex subunit Tim54 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene serine/threonine protein kinase (CK1 family) Cki1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chaperone-Facilitated Aggregation of Thermo-Sensitive Proteins Shields Them from Degradation during Heat Stress. Cabrera M, et al. Cell Rep, 2020 Feb 18. PMID 32075773
  2. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
  3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables Hsp70 protein binding ISM
Inferred from Sequence Model
more info
  
enables protein-folding chaperone binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in ERAD pathway ISO
Inferred from Sequence Orthology
more info
  
involved_in cellular response to unfolded protein ISO
Inferred from Sequence Orthology
more info
  
involved_in protein folding in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  
involved_in protein refolding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum lumen ISO
Inferred from Sequence Orthology
more info
  
NOT is_active_in protein aggregate center IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
DNAJ domain-containing protein Scj1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    4069163..4070724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022621.3 → NP_596697.3  DNAJ domain-containing protein Scj1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596697.3

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O94625, Q9Y8G9
    Conserved Domains (4) summary
    cd10719
    Location:168 → 237
    DnaJ_zf; Zinc finger domain of DnaJ and HSP40
    cd10747
    Location:236 → 376
    DnaJ_C; C-terminal substrate binding domain of DnaJ and HSP40
    COG0484
    Location:20 → 389
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:24 → 86
    DnaJ; DnaJ domain
Nucleotide Protein
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