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fmd1 glutathione-dependent formaldehyde dehydrogenase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540073, updated on 18-Sep-2024

Summary

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Official Symbol
fmd1
Official Full Name
glutathione-dependent formaldehyde dehydrogenase
Primary source
PomBase:SPBC1539.07c
Locus tag
SPOM_SPBC1539.07C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See fmd1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003423.3 (4373541..4375125, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene COG complex subunit Cog3 Neighboring gene ncRNA Neighboring gene acyl-coenzyme A binding protein Neighboring gene ncRNA Neighboring gene ADP-ribosylation factor-like protein Arf6 Neighboring gene ncRNA Neighboring gene anthranilate synthase component II

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables S-(hydroxymethyl)glutathione dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
  
enables S-(hydroxymethyl)glutathione dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
  
enables S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables S-nitrosoglutathione reductase (NADH) activity IEA
Inferred from Electronic Annotation
more info
  
enables alcohol dehydrogenase (NAD+) activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in formaldehyde catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
glutathione-dependent formaldehyde dehydrogenase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    4373541..4375125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023841.3 → NP_596821.1  glutathione-dependent formaldehyde dehydrogenase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596821.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P78870, Q9UUF6
    Conserved Domains (2) summary
    cd08300
    Location:8 → 374
    alcohol_DH_class_III; class III alcohol dehydrogenases
    COG1062
    Location:8 → 375
    FrmA; Zn-dependent alcohol dehydrogenase [General function prediction only]
Nucleotide Protein
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