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esf1 pre-rRNA processing protein Esf1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540076, updated on 18-Sep-2024

Summary

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Official Symbol
esf1
Official Full Name
pre-rRNA processing protein Esf1
Primary source
PomBase:SPBC1734.01c
Locus tag
SPOM_SPBC1734.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPBC337.17c
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Genomic context

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See esf1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (1059368..1061596, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene putative phosphatidyl-N-methylethanolamine N-methyltransferase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA polymerase delta subunit Cdc27 Neighboring gene ncRNA Neighboring gene dihydropteroate synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteome-wide search for PP2A substrates in fission yeast. Bernal M, et al. Proteomics, 2014 Jun. PMID 24634168
  2. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleolus HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
pre-rRNA processing protein Esf1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1059368..1061596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021325.3 → NP_595418.1  pre-rRNA processing protein Esf1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595418.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74828
    Conserved Domains (2) summary
    COG5638
    Location:10 → 682
    COG5638; Uncharacterized conserved protein [Function unknown]
    pfam08159
    Location:602 → 630
    NUC153; NUC153 domain
Nucleotide Protein
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