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avt5 vacuolar amino acid transmembrane transporter Avt5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540081, updated on 18-Sep-2024

Summary

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Official Symbol
avt5
Official Full Name
vacuolar amino acid transmembrane transporter Avt5
Primary source
PomBase:SPBC1685.07c
Locus tag
SPOM_SPBC1685.07C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See avt5 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (509491..512849, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene serine protease Neighboring gene poly(A) polymerase Cid11 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Avt5p is required for vacuolar uptake of amino acids in the fission yeast Schizosaccharomyces pombe. Chardwiriyapreecha S, et al. FEBS Lett, 2010 Jun 3. PMID 20388511
  2. The fission yeast nucleoporin Alm1 is required for proteasomal degradation of kinetochore components. Salas-Pino S, et al. J Cell Biol, 2017 Nov 6. PMID 28974540, Free PMC Article
  3. Phosphorylation of the RNA-binding protein Zfs1 modulates sexual differentiation in fission yeast. Navarro FJ, et al. J Cell Sci, 2017 Dec 15. PMID 29084823, Free PMC Article
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables L-arginine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables L-arginine transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables L-glutamate transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables L-glutamate transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables L-histidine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables L-histidine transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables L-lysine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables L-lysine transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables L-serine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables L-serine transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables L-tyrosine transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables L-tyrosine transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-arginine transmembrane import into vacuole IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in L-glutamate import involved in cellular response to nitrogen starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in L-glutamate transmembrane import into vacuole IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in L-histidine transmembrane import into vacuole IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in L-lysine import into vacuole involved in cellular response to nitrogen starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in L-lysine transmembrane import into vacuole IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in L-serine transmembrane import into vacuole IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in L-tyrosine transmembrane import into vacuole IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in amino acid transmembrane import into vacuole IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in amino acid transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in fungal-type vacuole membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in fungal-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
vacuolar amino acid transmembrane transporter Avt5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    509491..512849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021118.3 → NP_595211.1  vacuolar amino acid transmembrane transporter Avt5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595211.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74327
    Conserved Domains (2) summary
    COG0814
    Location:11 → 418
    SdaC; Amino acid permease [Amino acid transport and metabolism]
    cl00456
    Location:17 → 409
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials