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srr1 SRR1 family protein, DNA-repair associated protein, Srr1, conflicting annotations across species [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540090, updated on 18-Sep-2024

Summary

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Official Symbol
srr1
Official Full Name
SRR1 family protein, DNA-repair associated protein, Srr1, conflicting annotations across species
Primary source
PomBase:SPBC14C8.13
Locus tag
SPOM_SPBC14C8.13
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
ber1
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Genomic context

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See srr1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (2224976..2228837)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene mitochondrial 54S ribosomal protein bL28m Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase subunit Rpb8 Neighboring gene rRNA processing protein Pol5 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene triglyceride lipase-cholesterol esterase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Fission yeast Srr1 and Skb1 promote isochromosome formation at the centromere. Mongia P, et al. Commun Biol, 2023 May 26. PMID 37237082, Free PMC Article
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in DNA damage response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
NOT involved_in DNA replication checkpoint signaling IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
SRR1 family protein, DNA-repair associated protein, Srr1, conflicting annotations across species

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2224976..2228837
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021824.3 → NP_595916.1  SRR1 family protein, DNA-repair associated protein, Srr1, conflicting annotations across species [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595916.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60093
    Conserved Domains (1) summary
    pfam07985
    Location:73 → 124
    SRR1; SRR1
Nucleotide Protein
Heading Accession and Version

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