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vps52 GARP complex subunit Vps52 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540233, updated on 18-Sep-2024

Summary

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Official Symbol
vps52
Official Full Name
GARP complex subunit Vps52
Primary source
PomBase:SPBC336.11
Locus tag
SPOM_SPBC336.11
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See vps52 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (2759534..2761211)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene protein Spc24 Neighboring gene RNA polymerase I general transcription initiation factor subunit Rrn7 Neighboring gene putative translation elongation factor eIF5A Neighboring gene DNA-binding transcription factor, MBF transcription factor complex subunit Cdc10 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables syntaxin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in Golgi to vacuole transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in endocytic recycling IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular protein transport IC
Inferred by Curator
more info
  
involved_in retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of GARP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in Golgi apparatus HDA PubMed 

General protein information

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Preferred Names
GARP complex subunit Vps52

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2759534..2761211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022049.3 → NP_596131.1  GARP complex subunit Vps52 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596131.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9UST3
    Conserved Domains (1) summary
    pfam04129
    Location:1 → 508
    Vps52; Vps52 / Sac2 family
Nucleotide Protein
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Gene LinkOut

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Research Materials