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tfb5 transcription factor TFIIH complex subunit Tfb5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540257, updated on 18-Sep-2024

Summary

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Official Symbol
tfb5
Official Full Name
transcription factor TFIIH complex subunit Tfb5
Primary source
PomBase:SPBC32F12.15
Locus tag
SPOM_SPBC32F12.15
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See tfb5 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (2809874..2810539)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase Tdh1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene golgi membrane protein involved in vesicle-mediated transport Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein mni1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Suppression of the Schizosaccharomyces pombe cut12.1 cell-cycle defect by mutations in cdc25 and genes involved in transcriptional and translational control. Tallada VA, et al. Genetics, 2007 May. PMID 17409062, Free PMC Article
  2. RNA polymerase II initiation factor interactions and transcription start site selection. Li Y, et al. Science, 1994 Feb 11. PMID 8303296
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity EXP
Inferred from Experiment
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-excision repair, preincision complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription initiation at RNA polymerase II promoter EXP
Inferred from Experiment
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 
part_of transcription factor TFIIH core complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of transcription factor TFIIH holo complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
transcription factor TFIIH complex subunit Tfb5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2809874..2810539
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022074.3 → NP_596155.1  transcription factor TFIIH complex subunit Tfb5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596155.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9HDW3
    Conserved Domains (1) summary
    pfam06331
    Location:1 → 66
    Tfb5; Transcription factor TFIIH complex subunit Tfb5
Nucleotide Protein
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