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rps402 40S ribosomal protein eS4 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540325, updated on 18-Sep-2024

Summary

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Official Symbol
rps402
Official Full Name
40S ribosomal protein eS4
Primary source
PomBase:SPBC21B10.10
Locus tag
SPOM_SPBC21B10.10
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
rps4-2
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Genomic context

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See rps402 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (1650825..1651833, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene meiotic recombination protein Rec6 Neighboring gene ncRNA Neighboring gene dolichol-phosphate mannosyltransferase regulatory subunit Dpm2 Neighboring gene acetyl-CoA transporter Neighboring gene mitochondrial ribosomal protein Ymr1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article
  2. Characterization of Mug33 reveals complementary roles for actin cable-dependent transport and exocyst regulators in fission yeast exocytosis. Snaith HA, et al. J Cell Sci, 2011 Jul 1. PMID 21652630, Free PMC Article
  3. Transcription and chromatin-based surveillance mechanism controls suppression of cryptic antisense transcription. Heo DH, et al. Cell Rep, 2021 Sep 7. PMID 34496258, Free PMC Article
  4. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
  5. A non-transcriptional role for the glucocorticoid receptor in mediating the cell stress response. Ptushkina M, et al. Sci Rep, 2017 Sep 21. PMID 28935859, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
  
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleolus HDA PubMed 

General protein information

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Preferred Names
40S ribosomal protein eS4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1650825..1651833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021572.3 → NP_595677.1  40S ribosomal protein eS4 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595677.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9USW5
    Conserved Domains (6) summary
    PLN00036
    Location:1 → 257
    PLN00036; 40S ribosomal protein S4; Provisional
    cd00165
    Location:44 → 112
    S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
    cd06087
    Location:175 → 229
    KOW_RPS4; KOW motif of Ribosomal Protein S4 (RPS4)
    pfam00900
    Location:95 → 169
    Ribosomal_S4e; Ribosomal family S4e
    pfam08071
    Location:3 → 39
    RS4NT; RS4NT (NUC023) domain
    pfam16121
    Location:212 → 259
    40S_S4_C; 40S ribosomal protein S4 C-terminus
Nucleotide Protein
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