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lsb5 protein lsb5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540327, updated on 18-Sep-2024

Summary

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Official Symbol
lsb5
Official Full Name
protein lsb5
Primary source
PomBase:SPBC31F10.07
Locus tag
SPOM_SPBC31F10.07
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See lsb5 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3762937..3764439)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene glutathione-specific gamma-glutamylcyclotransferase Ggg1 Neighboring gene mediator complex subunit Med17 Neighboring gene protein mug37 Neighboring gene ADP-ribosylation factor Sar1 Neighboring gene ncRNA Neighboring gene mediator complex subunit Med10 Neighboring gene ncRNA Neighboring gene protein Mde2 Neighboring gene armadillo-type fold protein, zf-MYND type zinc finger protein, Mub1-Rad6-Ubr2 ubiquitin ligase complex Mub1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  2. A genetic screen to discover pathways affecting cohesin function in Schizosaccharomyces pombe identifies chromatin effectors. Chen Z, et al. G3 (Bethesda), 2012 Oct. PMID 23050226, Free PMC Article
  3. Expanded Interactome of the Intrinsically Disordered Protein Dss1. Schenstrøm SM, et al. Cell Rep, 2018 Oct 23. PMID 30355493, Free PMC Article
  4. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article
  5. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in actin cortical patch localization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in actin cytoskeleton organization ISO
Inferred from Sequence Orthology
more info
  
involved_in actin filament organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in endocytosis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in actin cortical patch IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cell cortex HDA PubMed 
is_active_in mitotic spindle pole body HDA PubMed 

General protein information

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Preferred Names
protein lsb5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3762937..3764439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022490.3 → NP_596569.1  protein lsb5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596569.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P87308
    Conserved Domains (2) summary
    pfam00790
    Location:12 → 145
    VHS; VHS domain
    cd14232
    Location:169 → 246
    GAT_LSB5; GAT domain found in yeast LAS seventeen-binding protein 5 (Lsb5p) and similar proteins
Nucleotide Protein
Heading Accession and Version

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